PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1853
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family S1Fa-like
Protein Properties Length: 80aa    MW: 8926.61 Da    PI: 10.5141
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1853genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA139.28.7e-441580570
         S1FA  5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                 ++eakG+nPGlivllv+ggll++flvgnyily yaqk+lPPrkkkPvskkk+kre+lkqGv++PGe
  Gh_A01G1853 15 ETEAKGFNPGLIVLLVIGGLLITFLVGNYILYSYAQKTLPPRKKKPVSKKKMKRERLKQGVSAPGE 80
                 689**************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046894.3E-411680IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MSNEFADKGD KIIYETEAKG FNPGLIVLLV IGGLLITFLV GNYILYSYAQ KTLPPRKKKP  60
VSKKKMKRER LKQGVSAPGE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.120871e-122boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468304.12e-37PREDICTED: DNA-binding protein S1FA-like
SwissprotQ7XLX64e-20S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A0B0N2252e-51A0A0B0N225_G
STRINGSolyc09g007500.2.12e-20(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769